PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01727.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Trihelix
Protein Properties Length: 351aa    MW: 38694.2 Da    PI: 9.2959
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01727.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.78.3e-2044134186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                       +W+ +e+ aLi+a+r+++ +lrrg+l++++W+ev++ +         ++++qC++k+e+l+kry+++ +++  +    + +s++++f+ ++
  Migut.N01727.1.p  44 CWSPDETVALIDAYRDKWYSLRRGNLRANHWQEVADDVasrCPASPPKTAVQCRHKMEKLRKRYRAEIQRSAAHggVRRYTSSWVHFHIMH 134
                       7*************************************5432234489******************99999888556888999*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2143136No hitNo description
PROSITE profilePS500906.20245104IPR017877Myb-like domain
SMARTSM005954.9E-1152141IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSTTLSPSSH DDDHHHHHIP TATLALPSSA AATSSASRRL PPPCWSPDET VALIDAYRDK  60
WYSLRRGNLR ANHWQEVADD VASRCPASPP KTAVQCRHKM EKLRKRYRAE IQRSAAHGGV  120
RRYTSSWVHF HIMHAMEKGP NPTPPSSDDD DEEEENDHRN SIKRINDLYN HNQKGGFAAP  180
DPPETNGSTS GFRIKIPGRV TSAGGGVPTV AKVYSKFDEM GSGGGPNPNY PNPRFTNYTT  240
GVNGAAASSK VSRDGFVGKR AAAEPSSKNK ADSGVGELVS AIQGLGEGFM RMEKVKMDMV  300
RQIEEMRMEM ELKRTEMILE SEQRIVEAFA KSISERNTKR AKRNSNTPEC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831461.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A022RTR30.0A0A022RTR3_ERYGU; Uncharacterized protein
STRINGSolyc01g088820.2.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-39Trihelix family protein